Baitaphish
Security intelligence
SearchLatest briefing
CVE Explorer

CVE-2026-31962

HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. While most alignment records store DNA sequence and quality values, the format also allows them to omit this data in certain cases to save space. Due to some quirks of the CRAM format, it is necessary to handle these records carefully as they will actually store data that needs to be consumed and then discarded. Unfortunately the `cram_decode_seq()` did n
Lifecycle PUBLISHED1 preserved revisionFact urn:baitaphish:canonical-cve-fact-revision:v2:8b39c55151fe18978db72ea27f2734f3eb831b7bbaed46d731f329202f48f514
Known exploited
Not asserted
Disputed
No
Stale source
No
Conflicts
1

Preserved source conflicts

No provider value was silently selected as the winner.

cwe · 4 assertions

{"cweId":"CWE-125","description":"CWE-125: Out-of-bounds Read","lang":"en","type":"CWE"}

  • cve_program_cvelist_v5cwe
    urn:baitaphish:normalized-source-record:v2:620ebaee53b7effe8f3c71304211c1fc46c82046f2afd664b77d590a99523ad2 · sha256:1e43e09e41aa3741… · /containers/cna/problemTypes/1/descriptions/0

{"cweId":"CWE-122","description":"CWE-122: Heap-based Buffer Overflow","lang":"en","type":"CWE"}

  • cve_program_cvelist_v5cwe
    urn:baitaphish:normalized-source-record:v2:620ebaee53b7effe8f3c71304211c1fc46c82046f2afd664b77d590a99523ad2 · sha256:1e43e09e41aa3741… · /containers/cna/problemTypes/0/descriptions/0

{"cweId":"CWE-129","description":"CWE-129: Improper Validation of Array Index","lang":"en","type":"CWE"}

  • cve_program_cvelist_v5cwe
    urn:baitaphish:normalized-source-record:v2:620ebaee53b7effe8f3c71304211c1fc46c82046f2afd664b77d590a99523ad2 · sha256:1e43e09e41aa3741… · /containers/cna/problemTypes/2/descriptions/0

{"cweId":"CWE-787","description":"CWE-787: Out-of-bounds Write","lang":"en","type":"CWE"}

  • cve_program_cvelist_v5cwe
    urn:baitaphish:normalized-source-record:v2:620ebaee53b7effe8f3c71304211c1fc46c82046f2afd664b77d590a99523ad2 · sha256:1e43e09e41aa3741… · /containers/cna/problemTypes/3/descriptions/0

Affected products and versions

1 source assertion
{"product":"htslib","vendor":"samtools","versions":[{"status":"affected","version":"< 1.21.1"},{"status":"affected","version":">= 1.22, < 1.22.2"},{"status":"affected","version":"= 1.23"}]}
  • cve_program_cvelist_v5affected
    urn:baitaphish:normalized-source-record:v2:620ebaee53b7effe8f3c71304211c1fc46c82046f2afd664b77d590a99523ad2 · sha256:1e43e09e41aa3741… · /containers/cna/affected/0

Provider-owned CVSS observations

1 source assertion
{"metric":{"attackComplexity":"LOW","attackRequirements":"NONE","attackVector":"NETWORK","baseScore":8.8,"baseSeverity":"HIGH","privilegesRequired":"NONE","subAvailabilityImpact":"NONE","subConfidentialityImpact":"NONE","subIntegrityImpact":"NONE","userInteraction":"NONE","vectorString":"CVSS:4.0/AV:N/AC:L/AT:N/PR:N/UI:N/VC:L/VI:H/VA:L/SC:N/SI:N/SA:N","version":"4.0","vulnAvailabilityImpact":"LOW","vulnConfidentialityImpact":"LOW","vulnIntegrityImpact":"HIGH"},"metric_type":"cvssV4_0"}
  • cve_program_cvelist_v5cvss
    urn:baitaphish:normalized-source-record:v2:620ebaee53b7effe8f3c71304211c1fc46c82046f2afd664b77d590a99523ad2 · sha256:1e43e09e41aa3741… · /containers/cna/metrics/0/cvssV4_0

CWE assertions

4 source assertions
{"cweId":"CWE-125","description":"CWE-125: Out-of-bounds Read","lang":"en","type":"CWE"}
  • cve_program_cvelist_v5cwe
    urn:baitaphish:normalized-source-record:v2:620ebaee53b7effe8f3c71304211c1fc46c82046f2afd664b77d590a99523ad2 · sha256:1e43e09e41aa3741… · /containers/cna/problemTypes/1/descriptions/0
{"cweId":"CWE-122","description":"CWE-122: Heap-based Buffer Overflow","lang":"en","type":"CWE"}
  • cve_program_cvelist_v5cwe
    urn:baitaphish:normalized-source-record:v2:620ebaee53b7effe8f3c71304211c1fc46c82046f2afd664b77d590a99523ad2 · sha256:1e43e09e41aa3741… · /containers/cna/problemTypes/0/descriptions/0
{"cweId":"CWE-129","description":"CWE-129: Improper Validation of Array Index","lang":"en","type":"CWE"}
  • cve_program_cvelist_v5cwe
    urn:baitaphish:normalized-source-record:v2:620ebaee53b7effe8f3c71304211c1fc46c82046f2afd664b77d590a99523ad2 · sha256:1e43e09e41aa3741… · /containers/cna/problemTypes/2/descriptions/0
{"cweId":"CWE-787","description":"CWE-787: Out-of-bounds Write","lang":"en","type":"CWE"}
  • cve_program_cvelist_v5cwe
    urn:baitaphish:normalized-source-record:v2:620ebaee53b7effe8f3c71304211c1fc46c82046f2afd664b77d590a99523ad2 · sha256:1e43e09e41aa3741… · /containers/cna/problemTypes/3/descriptions/0

Source references

2 source assertions
{"name":"https://github.com/samtools/htslib/commit/d799b54c6401879187bba4741be83ff590ac73e3","tags":["x_refsource_MISC"],"url":"https://github.com/samtools/htslib/commit/d799b54c6401879187bba4741be83ff590ac73e3"}
  • cve_program_cvelist_v5reference
    urn:baitaphish:normalized-source-record:v2:620ebaee53b7effe8f3c71304211c1fc46c82046f2afd664b77d590a99523ad2 · sha256:1e43e09e41aa3741… · /containers/cna/references/1
{"name":"https://github.com/samtools/htslib/security/advisories/GHSA-xxmp-v7h3-gpwp","tags":["x_refsource_CONFIRM"],"url":"https://github.com/samtools/htslib/security/advisories/GHSA-xxmp-v7h3-gpwp"}
  • cve_program_cvelist_v5reference
    urn:baitaphish:normalized-source-record:v2:620ebaee53b7effe8f3c71304211c1fc46c82046f2afd664b77d590a99523ad2 · sha256:1e43e09e41aa3741… · /containers/cna/references/0

Attribution and limitations

  • CVE Program CVEList V5: Reproduce the MITRE copyright designation and CVE license in copies. Source →

Provider severity values are preserved separately. Baitaphish does not convert them into a risk rating, infer affected products, or treat EPSS as observed exploitation.

← Back to CVE Explorer